Should nueleotide sequence analyzing computer algorithms always extend homologies by extending homologies?

Genetic and base sequence homologies in bacillus.

influences are negligible, and that the changing environment and the nature of the gene product primarily determine those genes which evolve most rapidly. On the other hand, map position influences on evolutionary rate could be of such great importance that they provide selection pressure for map rearrangement. Because the genome of Bacillus subtilis is replicated in sequential order from one e...

Computing Minimum Area Homologies

Calculating and categorizing the similarity of curves is a fundamental problem which has generated much recent interest. However, to date there are no implementations of these algorithms for curves on surfaces with provable guarantees on the quality of the measure. In this paper, we present a similarity measure for any two cycles that are homologous, where we calculate the minimum area of any h...

Restriction maps and sequence homologies of two densovirus genomes.

The genomes of Junonia coenia densonucleosis virus (JcDNV) and Galleria mellonella densonucleosis virus (GmDNV) were analysed by restriction endonuclease analysis and Southern blot hybridization. A total of 37 and 33 restriction sites were mapped on JcDNV and GmDNV DNA, respectively. BglI, HaeII and BstEII were site-specific for JcDNV DNA, and BglII and ClaI for GmDNV DNA. The two genomes had n...

Homologies, Phylogenies, Sequence Space and the Theory of Evolution

Characterizations of Generalized Quadrangles by Generalized Homologies

Let S= (P, B, I) be a generalized quadrangle of order (s, t). For X, y E P, X+ y. let X(x, y) be the group of all collineations of S fixing x and y linewise. If ZE (4 YJL> then the set of all points incident with the line xz (resp. y;) is denoted by z(resp. 3. The generalized quadrangle S = (P, B, I) is said to be (x, y)-transitive, x+ y, if X(x, y) is transitive on each set Z{x, z} and jZ’-{ y...